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Bioinformatics Advance Access originally published online on February 10, 2004
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Bioinformatics 20(9) © Oxford University Press 2004; all rights reserved.

Applications Note

CNplot: visualizing pre-clustered networks

Nizar N. Batada

Program in Biophysics, Stanford University, Stanford, CA 94305, USA

Received on December 11, 2002; revised on November 17, 2003; accepted on December 18, 2003
Advance Access Publication February 10, 2004

Summary: CNplot is a simple technique for the visualization of global connectivity within pre-clustered network data. CNplot is easy to implement and in most cases produces informative and satisfactory summary of the data.

Availability: A Java implementation is available that allows users to modify graphics parameters and produces a LaTeX output. This software is free and is available at http://csb.stanford.edu/nbatada/VCN.html

Contact: nbatada{at}stanford.edu


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