Skip Navigation


Bioinformatics Advance Access originally published online on March 1, 2005
Bioinformatics 2005 21(10):2537-2538; doi:10.1093/bioinformatics/bti331
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
21/10/2537    most recent
bti331v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (3)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Torrance, G. M.
Right arrow Articles by Westhead, D. W.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Torrance, G. M.
Right arrow Articles by Westhead, D. W.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

Protein structure topological comparison, discovery and matching service

G. M. Torrance 1, D. R. Gilbert 1,*, I. Michalopoulos 2 and D. W. Westhead 2

1Bioinformatics Research Centre, Department of Computer Science, University of Glasgow Glasgow G12 8QQ UK
2School of Biochemistry and Microbiology, University of Leeds Leeds LS2 9JT, UK

*To whom correspondence should be addressed.

Summary: We describe a fold level fast protein comparison and motif matching facility based on the TOPS representation of structure. This provides an update to a previous service at the EBI, with a better graph matching with faster results and visualization of both the structures being compared against and the common pattern of each with the target domain.

Availability: Web service at http://balabio.dcs.gla.ac.uk/tops or via the main TOPS site at http://www.tops.leeds.ac.uk. Software is also available for download from these sites.

Contact: tops{at}brc.dcs.gla.ac.uk


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
S. Shi, B. Chitturi, and N. V. Grishin
ProSMoS server: a pattern-based search using interaction matrix representation of protein structures
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W526 - W531.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
M. Veeramalai and D. Gilbert
A novel method for comparing topological models of protein structures enhanced with ligand information
Bioinformatics, December 1, 2008; 24(23): 2698 - 2705.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
S. Shi, Y. Zhong, I. Majumdar, S. Sri Krishna, and N. V. Grishin
Searching for three-dimensional secondary structural patterns in proteins with ProSMoS
Bioinformatics, June 1, 2007; 23(11): 1331 - 1338.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.