Skip Navigation


Bioinformatics Advance Access originally published online on March 29, 2005
Bioinformatics 2005 21(11):2787-2788; doi:10.1093/bioinformatics/bti408
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
21/11/2787    most recent
bti408v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (9)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Sen, T. Z.
Right arrow Articles by Kloczkowski, A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Sen, T. Z.
Right arrow Articles by Kloczkowski, A.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

GOR V server for protein secondary structure prediction

Taner Z. Sen 1,2, Robert L. Jernigan 1,2, Jean Garnier 3 and Andrzej Kloczkowski 1,*

1L.H. Baker Center for Bioinformatics and Biological Statistics, Iowa State University Ames, IA 50011, USA
2Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University Ames, IA 50011, USA
3INRA—Unite MIG Bat. 233, Domaine de Vilvert 78352 Jouy en Josas Cedex, France

*To whom correspondence should be addressed.

Summary: We have created the GOR V web server for protein secondary structure prediction. The GOR V algorithm combines information theory, Bayesian statistics and evolutionary information. In its fifth version, the GOR method reached (with the full jack-knife procedure) an accuracy of prediction Q3 of 73.5%. Although GOR V has been among the most successful methods, its online unavailability has been a deterrent to its popularity. Here, we remedy this situation by creating the GOR V server.

Availability: The GOR V server is freely accessible to public users and private institutions at http://gor.bb.iastate.edu/

Contact: kloczkow{at}iastate.edu


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 J. Biol. Chem.Home page
Y. Liu, K. S. Matthews, and S. E. Bondos
Multiple Intrinsically Disordered Sequences Alter DNA Binding by the Homeodomain of the Drosophila Hox Protein Ultrabithorax
J. Biol. Chem., July 25, 2008; 283(30): 20874 - 20887.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
H. Cheng, T. Z. Sen, R. L. Jernigan, and A. Kloczkowski
Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: Combining GOR V and Fragment Database Mining (FDM)
Bioinformatics, October 1, 2007; 23(19): 2628 - 2630.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
L. V. Wray Jr. and S. H. Fisher
Functional Analysis of the Carboxy-Terminal Region of Bacillus subtilis TnrA, a MerR Family Protein
J. Bacteriol., January 1, 2007; 189(1): 20 - 27.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
B. Jayaram, K. Bhushan, S. R. Shenoy, P. Narang, S. Bose, P. Agrawal, D. Sahu, and V. Pandey
Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins
Nucleic Acids Res., December 4, 2006; 34(21): 6195 - 6204.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
O. B. Kashlan, A. B. Maarouf, C. Kussius, R. M. Denshaw, K. M. Blumenthal, and T. R. Kleyman
Distinct Structural Elements in the First Membrane-spanning Segment of the Epithelial Sodium Channel
J. Biol. Chem., October 13, 2006; 281(41): 30455 - 30462.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.