Skip Navigation


Bioinformatics Advance Access originally published online on April 21, 2005
Bioinformatics 2005 21(12):2914-2916; doi:10.1093/bioinformatics/bti438
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
21/12/2914    most recent
bti438v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (18)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Canutescu, A. A.
Right arrow Articles by Dunbrack, R. L.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Canutescu, A. A.
Right arrow Articles by Dunbrack, R. L., Jr.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

MollDE: a homology modeling framework you can click with

Adrian A. Canutescu and Roland L. Dunbrack, Jr. *

Institute for Cancer Research, Fox Chase Cancer Center 333 Cottman Avenue, Philadelphia, PA 19111, USA

*To whom correspondence should be addressed.

Summary: Molecular Integrated Development Environment (MolIDE) is an integrated application designed to provide homology modeling tools and protocols under a uniform, user-friendly graphical interface. Its main purpose is to combine the most frequent modeling steps in a semi-automatic, interactive way, guiding the user from the target protein sequence to the final three-dimensional protein structure. The typical basic homology modeling process is composed of building sequence profiles of the target sequence family, secondary structure prediction, sequence alignment with PDB structures, assisted alignment editing, side-chain prediction and loop building. All of these steps are available through a graphical user interface. MolIDE's user-friendly and streamlined interactive modeling protocol allows the user to focus on the important modeling questions, hiding from the user the raw data generation and conversion steps. MolIDE was designed from the ground up as an open-source, cross-platform, extensible framework. This allows developers to integrate additional third-party programs to MolIDE.

Availability: http://dunbrack.fccc.edu/molide/molide.php

Contact: rl_dunbrack{at}fccc.edu


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 J. Biol. Chem.Home page
D. J. Killock, M. Parsons, M. Zarrouk, S. M. Ameer-Beg, A. J. Ridley, D. O. Haskard, M. Zvelebil, and A. Ivetic
In Vitro and in Vivo Characterization of Molecular Interactions between Calmodulin, Ezrin/Radixin/Moesin, and L-selectin
J. Biol. Chem., March 27, 2009; 284(13): 8833 - 8845.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
D. Y. Oh, J. M. Yoon, M. J. Moon, J.-I. Hwang, H. Choe, J. Y. Lee, J. I. Kim, S. Kim, H. Rhim, D. K. O'Dell, et al.
Identification of Farnesyl Pyrophosphate and N-Arachidonylglycine as Endogenous Ligands for GPR92
J. Biol. Chem., July 25, 2008; 283(30): 21054 - 21064.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Biol. CellHome page
M. K. Singh, D. Dadke, E. Nicolas, I. G. Serebriiskii, S. Apostolou, A. Canutescu, B. L. Egleston, and E. A. Golemis
A Novel Cas Family Member, HEPL, Regulates FAK and Cell Spreading
Mol. Biol. Cell, April 1, 2008; 19(4): 1627 - 1636.
[Abstract] [Full Text] [PDF]

Home page
 BloodHome page
J. L. Roberts, J. P. H. Lauritsen, M. Cooney, R. E. Parrott, E. O. Sajaroff, C. M. Win, M. D. Keller, J. H. Carpenter, J. Carabana, M. S. Krangel, et al.
T-B+NK+ severe combined immunodeficiency caused by complete deficiency of the CD3{zeta} subunit of the T-cell antigen receptor complex
Blood, April 15, 2007; 109(8): 3198 - 3206.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
Q. Xu, A. Canutescu, Z. Obradovic, and R. L. Dunbrack Jr
ProtBuD: a database of biological unit structures of protein families and superfamilies
Bioinformatics, December 1, 2006; 22(23): 2876 - 2882.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
J. W. Arthur, A. Sanchez-Perez, and D. I. Cook
Scoring of predicted GRK2 phosphorylation sites in Nedd4-2
Bioinformatics, September 15, 2006; 22(18): 2192 - 2195.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.