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Bioinformatics Advance Access originally published online on April 26, 2005
Bioinformatics 2005 21(14):3174-3175; doi:10.1093/bioinformatics/bti464
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

Dynamite extended: two new services to simplify protein dynamic analysis

C. Paul Barrett and Martin E. M. Noble *

Laboratory of Molecular Biophysics, Department of Biochemistry, University of Oxford Oxford OX1 3QU, UK

*To whom correspondence should be addressed.

Summary: We describe two additional services now available as part of the previously described Dynamite protein dynamics web service. Dynatraj provides principle component analysis and visualization of modes of motion for a user's own ensemble of protein structures, e.g. from Molecular Dynamics, NMR or experimental ensembles. Dynapocket predicts probable configurations of a protein pocket from a single known structure. Both have been provided in response to requests from users for additional functionality from the Dynamite server. Like Dynamite, both are available free of charge to all users.

Availability: Free of charge at http://dynamite.biop.ox.ac.uk/dynamite

Contact: dynadmin{at}biop.ox.ac.uk

Received on March 31, 2005; revised on April 21, 2005; accepted on April 22, 2005

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