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Bioinformatics Advance Access originally published online on May 6, 2005
Bioinformatics 2005 21(14):3193-3194; doi:10.1093/bioinformatics/bti489
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data

Mark A. van de Wiel 1,3,*, Serge J. Smeets 2, Ruud H. Brakenhoff 2 and Bauke Ylstra 3

1Department of Mathematics and Computer Science, Technische Universiteit Eindhoven PO Box 513, 5600 MB, Eindhoven, The Netherlands
2Department of Otolaryngology—Head and Neck Surgery, VU University Medical Center Amsterdam, The Netherlands
3Microarray Core Facility, VU University Medical Center Amsterdam, The Netherlands

*To whom correspondence should be addressed.

Summary: We compute P-values, based on the Wilcoxon test with ties, to compare two conditions with array comparative genomic hybridization data, and we provide a simple interface to export and plot these P-values.

Availability: CGHMultiArray is freely available at http://www.win.tue.nl/~markvdw/CGHMultiArray.html

Contact: m.a.v.d.wiel{at}tue.nl

Supplementary information: Programs, the manual and supplementary information are available on the website.

Received on March 22, 2005; revised on May 3, 2005; accepted on May 4, 2005

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