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Bioinformatics Advance Access originally published online on July 26, 2005
Bioinformatics 2005 21(17):3578-3579; doi:10.1093/bioinformatics/bti576
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

Automated Microarray Image Analysis Toolbox for MATLAB

Amanda M. White 1,*, Don S. Daly 1, Alan R. Willse 1, Miroslava Protic 2 and Darrell P. Chandler 2

1Statistical Sciences, Pacific Northwest National Laboratory Richland, WA 99352, USA
2Biochip Technology Center, Argonne National Laboratory Argonne, IL 60439, USA

*To whom correspondence should be addressed.

Summary: The Automated Microarray Image Analysis (AMIA) Toolbox for MATLAB is a flexible, open-source, microarray image analysis tool that allows the user to customize analyses of microarray image sets. This tool provides several methods to identify and quantify spot statistics, as well as extensive diagnostic statistics and images to evaluate data quality and array processing. The open, modular nature of AMIA provides access to implementation details and encourages modification and extension of AMIA's capabilities.

Availability: The AMIA Toolbox is freely available at http://www.pnl.gov/statistics/amia. The AMIA Toolbox requires MATLAB 6.5 (R13) (MathWorks, Inc. Natick, MA), as well as the Statistics Toolbox 4.1 and Image Processing Toolbox 4.1 for MATLAB or more recentversions.

Contact: amanda.white{at}pnl.gov

Received on May 12, 2005; revised on July 5, 2005; accepted on July 6, 2005

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