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Bioinformatics Advance Access originally published online on July 12, 2005
Bioinformatics 2005 21(17):3582-3583; doi:10.1093/bioinformatics/bti578
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

Applying GIFT, a Gene Interactions Finder in Text, to fly literature

Núria Domedel-Puig * and Lorenz Wernisch

School of Crystallography, Birkbeck College, University of London Malet Street, London, WC1E 7HX, UK

*To whom correspondence should be addressed.

Summary: A number of freely available text mining tools have been put together to extract highly reliable Drosophila gene interaction data from text. The system has been tested with The Interactive Fly, showing low recall (27–34%), but very high precision (93–97%).

Availability: The extracted data and a web interface for submission of texts to GIFT analysis are available at http://gift.cryst.bbk.ac.uk/gift

Contact: n.domedel_puig{at}cryst.bbk.ac.uk

Supplementary information: Additional documentation, such as the dictionaries and the reference sets, are available at the GIFT website.

Received on July 21, 2004; revised on July 4, 2005; accepted on July 6, 2005

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