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Bioinformatics Advance Access originally published online on October 5, 2004
Bioinformatics 2005 21(4):548-550; doi:10.1093/bioinformatics/bti048
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Bioinformatics vol. 21 issue 4 © Oxford University Press 2005; all rights reserved.

TFExplorer: integrated analysis database for predicted transcription regulatory elements

Jinsoo Kim 1, Jungmin Seo 1, Young Seek Lee 2 and Sangsoo Kim 1,*

1 National Genome Information Center KRIBB, Daejeon, Korea
2 Department of Molecular and Life Science, Hanyang University Ansan, Kyeonggi-do, Korea

*To whom correspondence should be addressed.

Summary: TFExplorer is a web-based integrated database for predicted regulatory elements in human, mouse and rat. It shows predicted binding sites of transcription factors in the promoter regions, along with their phylogenetic footprinting information. In addition, TFExplorer can search for genes that have a given sequence pattern in their promoter regions using the motif-searching method.

Availability: TFExplorer is freely available at http://mars.kribb.re.kr:8080/tfExplorer/

Contact: sskimb{at}kribb.re.kr


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