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Bioinformatics Advance Access originally published online on September 28, 2004
Bioinformatics 2005 21(4):554-556; doi:10.1093/bioinformatics/bti052
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Bioinformatics vol. 21 issue 4 © Oxford University Press 2005; all rights reserved.

arrayMagic: two-colour cDNA microarray quality control and preprocessing

Andreas Buness *, Wolfgang Huber , Klaus Steiner , Holger Sültmann and Annemarie Poustka

Department of Molecular Genome Analysis, German Cancer Research Center INF 580, Heidelberg, 69120, Germany

*To whom correspondence should be addressed.

Summary: arrayMagic is a software package for quality control and preprocessing of two-colour cDNA microarray data. The automated analysis pipeline comprises data import, normalization, replica merging, quality diagnostics and data export. The script-based processing combines reproducibility and flexibility at high-throughput and provides quality-assured and preprocessed microarray data to high-level follow-up analysis.

Availability: The R package arrayMagic is available with BSD license at http://www.bioconductor.org

Contact: a.buness{at}dkfz.de

Supplementary information: The package contains documentation in the form of manual pages and a vignette with a guided tour of a typical workflow.


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