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Bioinformatics Advance Access originally published online on November 16, 2004
Bioinformatics 2005 21(7):1284-1287; doi:10.1093/bioinformatics/bti143
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© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

Grid Cellware: the first grid-enabled tool for modelling and simulating cellular processes

Pawan K. Dhar *, Tan Chee Meng , Sandeep Somani , Li Ye , Kishore Sakharkar , Arun Krishnan , Azmi B.M. Ridwan , Sebastian Ho Kok Wah , Mandar Chitre and Zhu Hao

Systems Biology Group, Bioinformatics Institute 30 Biopolis Street, #07-01, Matrix, Singapore 138671

*To whom correspondence should be addressed.

Summary: Modelling and simulation of complex cellular transactions involve development of platforms that understand diverse mathematical representations and are capable of handling large backend computations. Grid Cellware, an integrated modelling and simulation tool, has been developed to precisely address these niche requirements of the modelling community. Grid Cellware implements various pathway simulation algorithms along with adaptive Swarm algorithm for parameter estimation. For enchanced computational productivity Grid Cellware uses grid technology with Globus as the middleware.

Availability: https://www.bii-sg.org/sbg/cellware

Contact: pk{at}bii-sg.org

Supplementary information: User Manual is available as PDF file. Examples are attached to expedite mastering of the software.


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