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Bioinformatics Advance Access originally published online on November 16, 2004
Bioinformatics 2005 21(7):1291-1293; doi:10.1093/bioinformatics/bti138
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© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

BRAGI: linking and visualization of database information in a 3D viewer and modeling tool

Joachim Reichelt 1,*, Guido Dieterich 1, Marsel Kvesic 2, Dietmar Schomburg 2 and Dirk W. Heinz 1

1Division of Structural Biology, German Research Centre for Biotechnology (GBF) Mascheroder Weg 1, D-38124, Braunschweig, Germany
2University of Cologne, Institute for Biochemistry Zülpicher Straße 47, D-50674, Köln, Germany

*To whom correspondence should be addressed.

Summary: BRAGI is a well-established package for viewing and modeling of three-dimensional (3D) structures of biological macromolecules. A new version of BRAGI has been developed that is supported on Windows, Linux and SGI. The user interface has been rewritten to give the standard ‘look and feel’ of the chosen operating system and to provide a more intuitive, easier usage. A large number of new features have been added. Information from public databases such as SWISS-PROT, InterPro, DALI and OMIM can be displayed in the 3D viewer. Structures can be searched for homologous sequences using the NCBI BLAST server.

Availability: Freeware, licensed: http://bragi.gbf.de/

Contact: Reichelt{at}gbf.de

Supplementary Information: http://bragi.gbf.de/gallery


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