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Bioinformatics Advance Access originally published online on December 14, 2004
Bioinformatics 2005 21(8):1301-1303; doi:10.1093/bioinformatics/bti206
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© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation

Alex Bateman *, Matthew T. G. Holden and Corin Yeats

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SA, UK

*To whom correspondence should be addressed.

Summary: Biofilms are complex microbial communities found at surfaces that are often associated with extracellular polysaccharides. Biofilm formation is a complex process that is being understood at the molecular level only recently. We have identified a novel domain that we call the G5 domain (named after its conserved glycine residues), which is found in a variety of enzymes such as Streptococcal IgA peptidases and various glycosyl hydrolases in bacteria. The G5 domain is found in the Accumulation Associated Protein (AAP), which is an important component in biofilm formation in Staphylococcus aureus. A common feature of the proteins containing G5 domains is N-acetylglucosamine binding, and we attribute this function to the G5 domain.

Contact: agb{at}sanger.ac.uk


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