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Bioinformatics Advance Access originally published online on December 7, 2004
Bioinformatics 2005 21(8):1711-1712; doi:10.1093/bioinformatics/bti195
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© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

RBT—a tool for building refined Buneman trees

Søren Besenbacher *, Thomas Mailund , Lasse Westh-Nielsen and Christian N. S. Pedersen

Bioinformatics Research Center, Department of Computer Science, University of Aarhus Høegh-Guldbergs Gade 10, Building 090, DK-8000 Århus C, Denmark

*To whom correspondence should be addressed.

Summary: We have developed a tool implementing an efficient algorithm for refined Buneman tree reconstruction. The algorithm—which has the same complexity as the neighbour-joining method and the (plain) Buneman tree construction—enables refined Buneman tree reconstruction on large taxa sets.

Availability: The source code for RBT, written in Java, is available under the GNU Public License (GPL) at http://www.birc.dk/Software/RBT

Contact: besen{at}daimi.au.dk


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