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Bioinformatics Advance Access originally published online on December 21, 2004
Bioinformatics 2005 21(8):1741-1742; doi:10.1093/bioinformatics/bti237
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© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

An enhanced Java graph applet interface for visualizing interactomes

Aaron N. Chang 1,2, Jason McDermott 2 and Ram Samudrala 2,*

1Biomedical and Health Informatics, University of Washington Seattle, WA 98195, USA
2Department of Microbiology, University of Washington Seattle, WA 98195, USA

*To whom correspondence should be addressed.

Summary: We have developed several new navigation features for a Java graph applet previously released for visualizing protein–protein interactions. This graph viewer can be used to navigate any molecular interactome dataset. We have successfully implemented this tool for exploring protein networks stored in the Bioverse interaction database.

Availability: http://bioverse.compbio.washington.edu/viewer

Contact: ram{at}compbio.washington.edu


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