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Bioinformatics Advance Access originally published online on December 21, 2004
Bioinformatics 2005 21(8):1743-1744; doi:10.1093/bioinformatics/bti235
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© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

GPSDB: a new database for synonyms expansion of gene and protein names

Violaine Pillet 1, Marc Zehnder 1, Alexander K. Seewald 2, Anne-Lise Veuthey 1 and Johann Petrak 2,*

1Swiss Institute of Bioinformatics CMU—Rue Michel-Servet 1, 1211 Geneva 4, Switzerland
2Austrian Research Institute for Artificial Intelligence Freyung 6/6, A-1010 Vienna, Austria

*To whom correspondence should be addressed.

Summary: We present a new database, GPSDB (Gene and Protein Synonyms DataBase) which collects gene/protein names, in a species specific way, from 14 main biological resources. A web-based search interface gives access to the database: given a gene/protein name, it retrieves all synonyms for this entity and queries Medline with a set of user-selected terms.

Availability: GPSDB is freely available from http://biomint.oefai.at/

Contact: johann{at}oefai.at


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