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Bioinformatics Advance Access originally published online on November 30, 2004
Bioinformatics 2005 21(8):1745-1746; doi:10.1093/bioinformatics/bti170
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© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

BIAS: Bioinformatics Integrated Application Software

G. Finak , N. Godin , M. Hallett *, F. Pepin , Z. Rajabi , V. Srivastava and Z. Tang

McGill Centre for Bioinformatics 3775 University Street McGill University Montreal, Canada H3A 2B4

*To whom correspondence should be addressed.

Motivation: We introduce a development platform especially tailored to Bioinformatics research and software development. BIAS (Bioinformatics Integrated Application Software) provides the tools necessary for carrying out integrative Bioinformatics research requiring multiple datasets and analysis tools. It follows an object-relational strategy for providing persistent objects, allows third-party tools to be easily incorporated within the system and supports standards and data-exchange protocols common to Bioinformatics.

Availability: BIAS is an OpenSource project and is freely available to all interested users at http://www.mcb.mcgill.ca/~bias/. This website also contains a paper containing a more detailed description of BIAS and a sample implementation of a Bayesian network approach for the simultaneous prediction of gene regulation events and of mRNA expression from combinations of gene regulation events.

Contact: hallett{at}mcb.mcgill.ca


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