Bioinformatics Advance Access originally published online on January 20, 2005
Bioinformatics 2005 21(9):1964-1970; doi:10.1093/bioinformatics/bti287
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Published by Oxford University Press 2005.
Small, fuzzy and interpretable gene expression based classifiers
Decision Systems Group, Brigham and Women's Hospital, and Division of Health Sciences and Technology, Harvard Medical School/Massachusetts Institute of Technology Boston, MA, USA
*To whom correspondence should be addressed.
Motivation: Interpretation of classification models derived from gene-expression data is usually not simple, yet it is an important aspect in the analytical process. We investigate the performance of small rule-based classifiers based on fuzzy logic in five datasets that are different in size, laboratory origin and biomedical domain.
Results: The classifiers resulted in rules that can be readily examined by biomedical researchers. The fuzzy-logic-based classifiers compare favorably with logistic regression in all datasets.
Availability: Prototype available upon request.
Contact: staal{at}dsg.harvard.edu