Skip Navigation


Bioinformatics Advance Access originally published online on January 12, 2005
Bioinformatics 2005 21(9):2095-2096; doi:10.1093/bioinformatics/bti252
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
21/9/2095    most recent
bti252v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (10)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Chalmel, F.
Right arrow Articles by Poch, O.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Chalmel, F.
Right arrow Articles by Poch, O.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

GOAnno: GO annotation based on multiple alignment

F. Chalmel 1,*, A. Lardenois 1, J.D. Thompson 1, J. Muller 1, J.-A. Sahel 2, T. Léveillard 2 and O. Poch 1

1Laboratoire de Biologie et Génomique Structurales, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM/ULP BP 163, 67404 Illkirch cedex, France
2Laboratoire de Physiopathologie Cellulaire et Moléculaire de la Rétine, Inserm U592, Université Pierre et Marie Curie 75571 Paris, France

*To whom correspondence should be addressed.

Summary: GOAnno is a web tool that automatically annotates proteins according to the Gene Ontology (GO) using evolutionary information available in hierarchized multiple alignments. GO terms present in the aligned functional subfamily can be cross-validated and propagated to obtain highly reliable predicted GO annotation based on the GOAnno algorithm.

Availability: The web tool and a reduced version for local installation are freely available at http://igbmc.u-strasbg.fr/GOAnno/GOAnno.html

Contact: chalmel{at}igbmc.u-strasbg.fr

Supplementary information: The website supplies a detailed explanation and illustration of the algorithm at http://igbmc.u-strasbg.fr/GOAnno/GOAnnoHelp.html


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
S. Gotz, J. M. Garcia-Gomez, J. Terol, T. D. Williams, S. H. Nagaraj, M. J. Nueda, M. Robles, M. Talon, J. Dopazo, and A. Conesa
High-throughput functional annotation and data mining with the Blast2GO suite
Nucleic Acids Res., June 1, 2008; 36(10): 3420 - 3435.
[Abstract] [Full Text] [PDF]

Home page
 Hum Mol GenetHome page
G. Abou-Sleymane, F. Chalmel, D. Helmlinger, A. Lardenois, C. Thibault, C. Weber, K. Merienne, J.-L. Mandel, O. Poch, D. Devys, et al.
Polyglutamine expansion causes neurodegeneration by altering the neuronal differentiation program
Hum. Mol. Genet., March 1, 2006; 15(5): 691 - 703.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
E. Hodges, J. S. Redelius, W. Wu, and C. Hoog
Accelerated Discovery of Novel Protein Function in Cultured Human Cells
Mol. Cell. Proteomics, September 1, 2005; 4(9): 1319 - 1327.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. D. Thompson, S. R. Holbrook, K. Katoh, P. Koehl, D. Moras, E. Westhof, and O. Poch
MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences
Nucleic Acids Res., July 25, 2005; 33(13): 4164 - 4171.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.