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Bioinformatics Advance Access originally published online on February 4, 2005
Bioinformatics 2005 21(9):2142-2143; doi:10.1093/bioinformatics/bti306
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions{at}oupjournals.org

MPSS: an integrated database system for surveying a set of proteins

Pei Hao 1,2, Wei-Zhong He 3, Yin Huang 2, Liang-Xiao Ma 3, Ying Xu 2, Hong Xi 3, Chuan Wang 2, Bo-Shu Liu 2, Jin-Miao Wang 2, Yi-Xue Li 2,* and Yang Zhong 1,*

1School of Life Sciences, Fudan University Shanghai 200433, China
2Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences Shanghai 200031, China
3Shanghai Center for Bioinformation Technology Shanghai 200235, China

*To whom correspondence should be addressed.

Summary: We design and implement an integrated database system called ‘multi-protein survey system’ (MPSS), which provides a platform to retrieve information about many proteins at a time. This system integrates several important and widely used databases including SwissProt, TrEMBL, PDB and InterPro, plus useful references such as GO and KEGG to other databases. Users may submit a group of protein IDs, entry names, SwissProt/TrEMBL accession numbers or GenBank GIs through MPSS’ web interface, and obtain protein annotation information from public databases and pre-computed molecular properties speedily. MPSS can also supply comprehensive information about query proteins, including 3D structures, domains, pathway, gene ontology and visual presentation of mapping to the GO tree and KEGG pathway, to provide an up-to-date view of available knowledge with regard to the structures and molecular functions of proteins under study.

Availability: MPSS is freely accessible at http://www.scbit.org/mpss/

Contact: yangzhong{at}fudan.edu.cn, yxli{at}sibs.ac.cn


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