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Bioinformatics Advance Access originally published online on November 2, 2005
Bioinformatics 2006 22(1):120-121; doi:10.1093/bioinformatics/bti747
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Published by Oxford University Press 2005
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Nexplorer: phylogeny-based exploration of sequence family data

Vivek Gopalan 1, Wei-Gang Qiu 2, Michael Z. Chen 1 and Arlin Stoltzfus 1,3,*

1Center for Advanced Research in Biotechnology 9600 Gudelsky Drive, Rockville, MD 20850, USA
2Department of Biological Sciences, Hunter College CUNY, 695 Park Avenue, New York, NY 10021, USA
3National Institute of Standards and Technology, Biochemical Science Division Gaithersburg, MD 20899-8310, USA

*To whom correspondence should be addressed.

Summary: Nexplorer is a web-based program for interactive browsing and manipulation of character data in NEXUS format, well suited for use with alignments and trees representing families of homologous genes or proteins. Users may upload a sequence family dataset, or choose from one of several thousand already available. Nexplorer provides a flexible means to develop customized views that combine a tree and a data matrix or alignment, to create subsets of data, and to output data files or publication-quality graphics.

Availability: Web access is from http://www.molevol.org/nexplorer

Contact: arlin.stoltzfus{at}nist.gov

Received on August 30, 2005; revised on October 17, 2005; accepted on October 25, 2005

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