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Bioinformatics Advance Access originally published online on March 30, 2006
Bioinformatics 2006 22(10):1275-1277; doi:10.1093/bioinformatics/btl111
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

SBMLToolbox: an SBML toolbox for MATLAB users

Sarah M. Keating 1,*, Benjamin J. Bornstein 2, Andrew Finney 3 and Michael Hucka 4

1 Science and Technology Research Institute, University of Hertfordshire Hatfield, UK
2 NASA Jet Propulsion Laboratory Pasadena, CA, USA
3 Physiomics PLC Oxford, UK
4 Biological Network Modeling Centre, Beckman Institute 139-74, California Institute of Technology Pasadena, CA, USA

*To whom correspondence should be addressed.

Summary: We present SBMLToolbox, a toolbox that facilitates importing and exporting models represented in the Systems Biology Markup Language (SBML) in and out of the MATLAB environment and provides functionality that enables an experienced user of either SBML or MATLAB to combine the computing power of MATLAB with the portability and exchangeability of an SBML model. SBMLToolbox supports all levels and versions of SBML.

Availability: SBMLToolbox is freely available from http://sbml.org/software/sbmltoolbox

Contact: s.m.keating{at}herts.ac.uk

Received on February 14, 2006; revised on March 20, 2006; accepted on March 21, 2006

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