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Bioinformatics Advance Access originally published online on April 4, 2006
Bioinformatics 2006 22(10):1278-1279; doi:10.1093/bioinformatics/btl093
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

ProMAT: protein microarray analysis tool

Amanda M. White 1,*, Don S. Daly 1, Susan M. Varnum 2, Kevin K. Anderson 3, Nikki Bollinger 2 and Richard C. Zangar 2

1 Statistical Sciences, Pacific Northwest National Laboratory Richland, WA 99354, USA
2 Cell Biology and Biochemistry, Pacific Northwest National Laboratory Richland, WA 99354, USA
3 Decision and Sensor Analytics, Pacific Northwest National Laboratory Richland, WA 99354, USA

*To whom correspondence should be addressed.

Summary: ProMAT is a software tool for statistically analyzing data from enzyme-linked immunosorbent assay microarray experiments. The software estimates standard curves, sample protein concentrations and their uncertainties for multiple assays. ProMAT generates a set of comprehensive figures for assessing results and diagnosing process quality. The tool is available for Windows or Mac, and is distributed as open-source Java and R code.

Availability: ProMAT is available at http://www.pnl.gov/statistics/ProMAT. ProMAT requires Java version 1.5.0 and R version 1.9.1 (or more recent versions). ProMAT requires either Windows XP or Mac OS 10.4 or newer versions.

Contact: amanda.white{at}pnl.gov

Received on December 20, 2005; revised on March 7, 2006; accepted on March 9, 2006

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