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Bioinformatics Advance Access originally published online on May 3, 2006
Bioinformatics 2006 22(13):1665-1667; doi:10.1093/bioinformatics/btl163
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
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Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data

Fei Pan 1,{dagger}, Kiran Kamath 1,{dagger}, Kangyu Zhang 1, Sudip Pulapura 1, Avinash Achar 1, Juan Nunez-Iglesias 1, Yu Huang 1, Xifeng Yan 2, Jiawei Han 2, Haiyan Hu 1, Min Xu 1, Jianjun Hu 1 and Xianghong Jasmine Zhou 1,*

1 Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA
2 Department of Computer Science, University of Illinois at Urbana-Champaign Urbana, IL 61801, USA

*To whom correspondence should be addressed.

Summary: The rapid accumulation of microarray data translates into an urgent need for tools to perform integrative microarray analysis. Integrative Array Analyzer is a comprehensive analysis and visualization software toolkit, which aims to facilitate the reuse of the large amount of cross-platform and cross-species microarray data. It is composed of the data preprocess module, the co-expression analysis module, the differential expression analysis module, the functional and transcriptional annotation module and the graph visualization module.

Availability: http://zhoulab.usc.edu

Contact: xjzhou{at}usc.edu

Received on February 16, 2006; revised on March 23, 2006; accepted on April 24, 2006

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