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Bioinformatics Advance Access originally published online on May 3, 2006
Bioinformatics 2006 22(14):1790-1791; doi:10.1093/bioinformatics/btl164
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

TopoICE-R: 3D visualization modeling the topology of DNA recombination

Isabel K. Darcy 1,* and Robert G. Scharein 2

1 Department of Mathematics, University of Iowa Iowa City, IA 52242, USA
2 Hypnagogic Software Vancouver, BC, Canada

*To whom correspondence should be addressed.

TopoICE-R is a three-dimensional visualization and manipulation software for solving 2-string tangle equations and can be used to model the topology of DNA bound by proteins such as recombinases and topoisomerases.

Availability: This software, manual and example files are available at www.knotplot.com/download for Linux, Windows and Mac.

Contact: idarcy{at}math.uiowa.edu

Received on October 13, 2005; revised on March 26, 2006; accepted on April 26, 2006

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Home page
 Nucleic Acids ResHome page
I. K. Darcy, R. G. Scharein, and A. Stasiak
3D visualization software to analyze topological outcomes of topoisomerase reactions
Nucleic Acids Res., June 1, 2008; 36(11): 3515 - 3521.
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