Skip Navigation


Bioinformatics Advance Access originally published online on May 26, 2006
Bioinformatics 2006 22(15):1919-1920; doi:10.1093/bioinformatics/btl269
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow Supplementary Material
Right arrowOA All Versions of this Article:
22/15/1919    most recent
btl269v2
btl269v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (8)
Google Scholar
Right arrow Articles by van Wieringen, W. N.
Right arrow Articles by Ylstra, B.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by van Wieringen, W. N.
Right arrow Articles by Ylstra, B.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data

Wessel N. van Wieringen 1, Jeroen A. M. Belien 2, Sjoerd J. Vosse 1, Eskeatnaf M. Achame 2 and Bauke Ylstra 2,*

1 Department of Mathematics, Vrije Universiteit De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands
2 Department of Pathology, VU Medical Center PO Box 7057, 1007 MB, Amsterdam, The Netherlands

*To whom correspondence should be addressed.

Summary: We describe a tool, called ACE-it (Array CGH Expression integration tool). ACE-it links the chromosomal position of the gene dosage measured by array CGH to the genes measured by the expression array. ACE-it uses this link to statistically test whether gene dosage affects RNA expression.

Availability: ACE-it is freely available at http://ibivu.cs.vu.nl/programs/acewww/

Contact: b.ylstra{at}vumc.nl

Supplementary Information: Programs, the manual and supplementary information are available on the website.

Received on February 21, 2006; revised on April 24, 2006; accepted on May 19, 2006

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Clin. Cancer Res.Home page
F. Andre, B. Job, P. Dessen, A. Tordai, S. Michiels, C. Liedtke, C. Richon, K. Yan, B. Wang, G. Vassal, et al.
Molecular Characterization of Breast Cancer with High-Resolution Oligonucleotide Comparative Genomic Hybridization Array
Clin. Cancer Res., January 15, 2009; 15(2): 441 - 451.
[Abstract] [Full Text] [PDF]

Home page
 GutHome page
B Carvalho, C Postma, S Mongera, E Hopmans, S Diskin, M A van de Wiel, W van Criekinge, O Thas, A Matthai, M A Cuesta, et al.
Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression
Gut, January 1, 2009; 58(1): 79 - 89.
[Abstract] [Full Text] [PDF]

Home page
 BiostatisticsHome page
W. N. Van Wieringen, M. A. Van De Wiel, and B. Ylstra
Weighted clustering of called array CGH data
Biostat., July 1, 2008; 9(3): 484 - 500.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.