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Bioinformatics Advance Access originally published online on June 16, 2006
Bioinformatics 2006 22(16):1933-1934; doi:10.1093/bioinformatics/btl288
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Building chromosome-wide LD maps

María M. Abad-Grau 1, Rosana Montes 1 and Paola Sebastiani 2,*

1 Software Engineering Department, University of Granada Granada 18071, Spain
2 Department of Biostatistics, Boston University School of Public Health Boston MA 02118, USA

*To whom correspondence should be addressed.


  Abstract

Summary: BMapBuilder builds maps of pairwise linkage disequilibrium (LD) in either two or three dimensions. The optimized resolution allows for graphical display of LD for single nucleotide polymorphisms (SNPs) in a whole chromosome.

Availability: The program is coded in Java, which runs on all relevant operating systems, including Windows, Mac and Unix/Linux, and is available from http://bios.ugr.es/BMapBuilder

Contact: sebas{at}bu.edu

Supplementary information: Maps displaying chomosome-wide LD are available at http://bios.ugr.es/BMapBuilder/supplementary

Associate Editor: Martin Bishop

Received on April 25, 2006; revised on May 26, 2006
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