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Bioinformatics Advance Access originally published online on August 7, 2006
Bioinformatics 2006 22(20):2570-2571; doi:10.1093/bioinformatics/btl425
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© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

UniGene Tabulator: a full parser for the UniGene format

Luca Lenzi , Flavia Frabetti , Federica Facchin , Raffaella Casadei , Lorenza Vitale , Silvia Canaider , Paolo Carinci , Maria Zannotti and Pierluigi Strippoli *

Department of Histology, Embryology and Applied Biology University of Bologna, 40126 Bologna, Italy

*To whom correspondence should be addressed.

Summary: UniGene Tabulator 1.0 provides a solution for full parsing of UniGene flat file format; it implements a structured graphical representation of each data field present in UniGene following import into a common database managing system usable in a personal computer. This database includes related tables for sequence, protein similarity, sequence-tagged site (STS) and transcript map interval (TXMAP) data, plus a summary table where each record represents a UniGene cluster.

UniGene Tabulator enables full local management of UniGene data, allowing parsing, querying, indexing, retrieving, exporting and analysis of UniGene data in a relational database form, usable on Macintosh (OS X 10.3.9 or later) and Windows (2000, with service pack 4, XP, with service pack 2 or later) operating systems-based computers.

Availability: The current release, including both the FileMaker runtime applications, is freely available at http://apollo11.isto.unibo.it/software/

Contact: pierluigi.strippoli{at}unibo.it

Supplementary information: We also distribute a precalculated implementation for current Homo sapiens (build #190, March 2006) and Danio rerio (zebrafish, build #90, March 2006) UniGene data.

Received on June 8, 2006; revised on July 31, 2006; accepted on July 31, 2006

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