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Bioinformatics Advance Access originally published online on August 25, 2006
Bioinformatics 2006 22(21):2697-2698; doi:10.1093/bioinformatics/btl457
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data

Tsun-Po Yang 1, Ting-Yu Chang 2, Chi-Hung Lin 1,2,4, Ming-Ta Hsu 1,3 and Hsei-Wei Wang 1,2,4,*

1 Microarray and Gene Expression Analysis Core Facility, VGH National Yang-Ming University Genome Research Center Taipei, Taiwan
2 Institute of Microbiology and Immunology Taipei, Taiwan
3 Institute of Biochemistry and Molecular Biology, National Yang-Ming University Taipei, Taiwan
4 Department of Teaching and Research, Taipei City Hospital Taipei, Taiwan

*To whom correspondence should be addressed.

Summary: ArrayFusion annotates conventional CGH results and various types of microarray data from a range of platforms (cDNA, expression, exon, SNP, array-CGH and ChIP-on-chip) and converts them into standard formats which can be visualized in genome browsers (AffymetrixTM Integrated Genome Browser and GBrowse in the HapMap Project). Converted files can then be imported simultaneously into a single genome browser to benefit a collective interpretation between different array results. ArrayFusion therefore provides a new type of tool facilitating the integration of CGH and array results to provide new experimental directions.

Availability: http://microarray.ym.edu.tw/tools/arrayfusion

Contact: hwwang{at}ym.edu.tw

Received on March 16, 2006; revised on July 11, 2006; accepted on August 21, 2006

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