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Bioinformatics Advance Access originally published online on November 15, 2005
Bioinformatics 2006 22(3):374-375; doi:10.1093/bioinformatics/bti776
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization

U. Dogrusoz *, E. Z. Erson , E. Giral , E. Demir , O. Babur , A. Cetintas and R. Colak

Bilkent Center for Bioinformatics (BCBI), Bilkent University Ankara 06800, Turkey

*To whom correspondence should be addressed.

Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats.

Availability: The Web site is freely accessible to non-commercial users from http://web.patika.org

Contact: patikaweb{at}cs.bilkent.edu.tr

Supplementary information: Detailed information is available on the tool Web site (http://www.cs.bilkent.edu.tr/~patikaweb), including key features, screenshots and User’s Guide.

Received on September 9, 2005; revised on November 8, 2005; accepted on November 10, 2005

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