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Bioinformatics Advance Access originally published online on January 10, 2006
Bioinformatics 2006 22(5):634-636; doi:10.1093/bioinformatics/btk039
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data

Mikko Katajamaa 1, Jarkko Miettinen 2 and Matej Oresic 2,*

1Turku Centre for Biotechnology Turku, Finland
2VTT Technical Research Centre of Finland Espoo, Finland

*To whom correspondence should be addressed.

Summary: New additional methods are presented for processing and visualizing mass spectrometry based molecular profile data, implemented as part of the recently introduced MZmine software. They include new features and extensions such as support for mzXML data format, capability to perform batch processing for large number of files, support for parallel processing, new methods for calculating peak areas using post-alignment peak picking algorithm and implementation of Sammon's mapping and curvilinear distance analysis for data visualization and exploratory analysis.

Availability: MZmine is available under GNU Public license from http://mzmine.sourceforge.net/

Contact: matej.oresic{at}vtt.fi

Received on November 25, 2005; revised on December 21, 2005; accepted on January 3, 2006

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