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Semantic Mining in Biomedicine (Introduction to the papers selected from the SMBM 2005 Symposium, Hinxton, U.K., April 2005)
Jena University, National Center for Biotechnology CNB-CSIC, Madrid (Valencia@cnb.uam.es), (Udo.Hahn@uni-jena.de)
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Researchers working in the life sciences domain in the past years have witnessed an enormous growth of literaturefor the whole field as well as for their highly specialized areas of expertise. Only small portions of the biomedical knowledge are accessible in a structured way, i.e. through formatted databases. These few pieces of textually encoded knowledge that have gone into databases are, by default, manually extracted from documents and manually inserted into databases after careful curation efforts by highly skilled domain experts. Still, the vast majority of biomedical knowledge captured in texts is not at disposal when biomedical databases are queried.
Life scientists have realized this loss of possibly highly relevant information and devised various forms of support. The weakest one is provided by information retrieval (IR) systems [for a life-science-centred survey; cf. Hersh (2002)]. Given a user-formulated query the terms from this query are appropriately matched with the terms