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Bioinformatics Advance Access originally published online on February 10, 2006
Bioinformatics 2006 22(7):885-886; doi:10.1093/bioinformatics/btl028
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Published by Oxford University Press 2006
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions@oxfordjournals.org

Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support

Payan Canaran 1, Lincoln Stein 1 and Doreen Ware 1,2,*

1Cold Spring Harbor Laboratory 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
2USDA-ARS NAA Plant, Soil and Nutrition Laboratory Research Unit Tower Road, Ithaca, NY 14853-2901, USA

*To whom correspondence should be addressed.

Summary: We have developed Look-Align, an interactive web-based viewer to display pre-computed multiple sequence alignments. Although initially developed to support the visualization needs of the maize diversity website Panzea (http://www.panzea.org), the viewer is a generic stand-alone tool that can be easily integrated into other websites.

Availability: Look-Align is written in Perl using open-source components and is available under an open-source license. Live installation and download information can be found at the Panzea website (http://www.panzea.org/software/alignment_viewer.html).

Contact: ware{at}cshl.edu

Supplementary information: The Supplementary information includes sample lists of multiple sequence alignment software and sample screenshots of the viewer.

Received on October 11, 2005; revised on January 24, 2006; accepted on January 26, 2006

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Home page
 Nucleic Acids ResHome page
P. Canaran, E. S. Buckler, J. C. Glaubitz, L. Stein, Q. Sun, W. Zhao, and D. Ware
Panzea: an update on new content and features
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D1041 - D1043.
[Abstract] [Full Text] [PDF]


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