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Bioinformatics Advance Access originally published online on February 24, 2006
Bioinformatics 2006 22(8):1002-1003; doi:10.1093/bioinformatics/btl052
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Mass Analysis Peptide Sequence Prediction (MAPSP)

Martin Eisenacher {dagger}, Jürgen de Braaf {dagger} and Simone König *

Integrated Functional Genomics (IFG), Interdisciplinary Center for Clinical Research (IZKF), Westfalian Wilhelms-University of Muenster Roentgenstr. 21, D-48149 Muenster, Germany

*To whom correspondence should be addressed.

Summary: The software tool MAPSP allows the combinatorial prediction of novel short peptides such as hormones with common sequence features. In addition, it assists in de novo sequencing in general. The tool was designed for use in conjunction with the analytical identification method of mass spectrometry (MS) and it can considerably speed-up the analysis of unknowns.

Availability: The web interface is freely available at http://mapsp.ifg.uni-muenster.de/

Contact: koenigs{at}uni-muenster.de

Received on September 14, 2005; revised on December 15, 2005; accepted on February 8, 2006

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