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Bioinformatics Advance Access originally published online on February 24, 2006
Bioinformatics 2006 22(8):1010-1012; doi:10.1093/bioinformatics/btl070
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© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Mayday-a microarray data analysis workbench

Janko Dietzsch {dagger}, Nils Gehlenborg {dagger} and Kay Nieselt *

Center for Bioinformatics Tübingen, Department of Information and Cognitive Sciences, University of Tübingen Sand 14, 72076 Tübingen, Germany

*To whom correspondence should be addressed.

Mayday is a workbench for visualization, analysis and storage of microarray data. It features a graphical user interface and supports the development and integration of existing and new analysis methods. Besides the infrastructural core functionality, Mayday offers a variety of plug-ins, such as various interactive viewers, a connection to the R statistical environment, a connection to SQL-based databases and different data mining methods, including WEKA-library based methods for classification and various clustering methods. In addition, so-called meta information objects are provided for annotation of the microarray data allowing integration of data from different sources, which is a feature that, for instance, is employed in the enhanced heatmap visualization.

Contact: nieselt{at}informatik.uni-tuebingen.de

Supplementary information: The software and more detailed information including screenshots and a user guide as well as test data can be found on the Mayday home page http://www.zbit.uni-tuebingen.de/pas/mayday. The core is published under the GPL (GNU Public License) and the associated plug-ins under the LGPL (Lesser GNU Public License).

Received on August 25, 2005; revised on February 22, 2006; accepted on February 22, 2006

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