Skip Navigation


Bioinformatics Advance Access originally published online on March 25, 2007
Bioinformatics 2007 23(11):1427-1428; doi:10.1093/bioinformatics/btm095
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
23/11/1427    most recent
btm095v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Cartwright, R. A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Cartwright, R. A.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Ngila: global pairwise alignments with logarithmic and affine gap costs

Reed A. Cartwright *

Department of Genetics, University of Georgia, Athens, GA 30602-7223, USA
Present address: Bioinformatics Research Center, North Carolina State University, Campus Box 7566, Raleigh, NC 27695-7566, USA

*To whom correspondence should be addressed.


  Abstract

Summary: Ngila is an application that will find the best alignment of a pair of sequences using log-affine gap costs, which are the most biologically realistic gap costs.

Availability: Portable source code for Ngila can be downloaded from its development website, http://scit.us/projects/ngila/. It compiles on most operating systems.

Contact: racartwr{at}ncsu.edu or reed{at}scit.us

Supplementary information: Appendices

Associate Editor: John Quackenbush

Received on October 31, 2006; revised on February 12, 2007; accepted on March 7, 2007

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Mol Biol EvolHome page
R. A. Cartwright
Problems and Solutions for Estimating Indel Rates and Length Distributions
Mol. Biol. Evol., February 1, 2009; 26(2): 473 - 480.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.