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Bioinformatics Advance Access originally published online on June 6, 2007
Bioinformatics 2007 23(16):2193-2195; doi:10.1093/bioinformatics/btm304
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins

Lukasz Salwinski and David Eisenberg *

UCLA-DOE Institute for Genomics & Proteomics, Departments of Chemistry & Biochemistry & Biological Chemistry, Howard Hughes Medical Institute, Box 951570, UCLA, Los Angeles, CA 90095, USA

*To whom correspondence should be addressed.


  Abstract

Summary: The MiSink Plugin converts Cytoscape, an open-source bioinformatics platform for network visualization, to a graphical interface for the database of interacting proteins (DIP: http://dip.doe-mbi.ucla.edu). Seamless integration is possible by providing bi-directional communication between Cytoscape and any Web site supplying data in XML or tab-delimited format.

Availability: MiSink is freely available for download at http://dip.doe-mbi.ucla.edu/Software.cgi

Contact: lukasz{at}mbi.ucla.edu

Associate Editor: Olga Troyanskaya

Received on March 28, 2007; revised on May 21, 2007; accepted on May 31, 2007

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[Abstract] [Full Text] [PDF]


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