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Bioinformatics Advance Access originally published online on June 1, 2007
Bioinformatics 2007 23(16):2198-2200; doi:10.1093/bioinformatics/btm112
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

OBO-Edit—an ontology editor for biologists

John Day-Richter 1,*, Midori A. Harris 2, Melissa Haendel 3, The Gene Ontology OBO-Edit Working Group4 and Suzanna Lewis 1

1Berkeley Bioinformatics and Ontology Project, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720 USA, 2GO Editorial Office, EMBL Outstation—European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 3Zebrafish Information Network, University of Oregon, Eugene, OR 97403, USA, and 4Gene Ontology Consortium

*To whom correspondence should be addressed.


  Abstract

Summary: OBO-Edit is an open source, platform-independent ontology editor developed and maintained by the Gene Ontology Consortium. Implemented in Java, OBO-Edit uses a graph-oriented approach to display and edit ontologies. OBO-Edit is particularly valuable for viewing and editing biomedical ontologies.

Availability: https://sourceforge.net/project/showfiles.php?group_id=36855

Contact: gohelp{at}geneontology.org

Associate Editor: Alex Bateman

Received on October 10, 2006; revised on February 9, 2007; accepted on March 15, 2007

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