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Bioinformatics Advance Access originally published online on February 25, 2007
Bioinformatics 2007 23(7):906-909; doi:10.1093/bioinformatics/btm031
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager

Anuj R. Shah *, Mudita Singhal , Kyle R. Klicker , Eric G. Stephan , H. Steven Wiley and Katrina M. Waters

Biomolecular Systems Initiative, Pacific Northwest National Laboratory, Richland, WA, USA

*To whom correspondence should be addressed.


  Abstract

Summary: The Bioinformatics Resource Manager (BRM) is a software environment that provides the user with data management, retrieval and integration capabilities. Designed in collaboration with biologists, BRM simplifies mundane analysis tasks of merging microarray and proteomic data across platforms, facilitates integration of users’ data with functional annotation and interaction data from public sources and provides connectivity to visual analytic tools through reformatting of the data for easy import or dynamic launching capability. BRM is developed using JavaTM and other open-source technologies for free distribution.

Availability: BRM, sample data sets and a user manual can be downloaded from http://www.sysbio.org/dataresources/brm.stm

Contact: anuj.shah{at}pnl.gov, brm{at}pnl.gov

Associate Editor: Golan Yona

Received on September 8, 2006; revised on January 23, 2007; accepted on January 24, 2007

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