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Bioinformatics Advance Access originally published online on February 18, 2007
Bioinformatics 2007 23(8):1032-1034; doi:10.1093/bioinformatics/btm047
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors

Dmitri Papatsenko

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA


  Abstract

ClusterDraw is a program aimed to identification of binding sites and binding-site clusters. Major difference of the ClusterDraw from existing tools is its ability to scan a wide range of parameter values and weigh statistical significance of all possible clusters, smaller than a selected size. The program produces graphs along with decorated FASTA files. ClusterDraw web server is available at the following URL: http://flydev.berkeley.edu/cgi-bin/cld/submit.cgi

Contact: dxp{at}berkeley.edu

Supplementary information: Supplementary data are available at Bioinformatics online.

Associate Editor: Alex Bateman

Received on October 25, 2006; revised on January 12, 2007; accepted on February 6, 2007

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