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Bioinformatics Advance Access originally published online on November 14, 2007
Bioinformatics 2008 24(1):143-145; doi:10.1093/bioinformatics/btm536
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

MetaNetter: inference and visualization of high-resolution metabolomic networks

Fabien Jourdan 1,*, Rainer Breitling 2, Michael P. Barrett 3 and David Gilbert 4

1UMR1089 Xénobiotiques INRA-ENVT, 180 chemin de Tournefeuille, St-Martin-du-Touch, BP3 31931 Toulouse, France, 2Groningen Bioinformatics Centre, University of Groningen, 9751NN Haren, The Netherlands, 3Institute of Biomedical and Life Sciences and4Bioinformatics Research Centre, University of Glasgow, Glasgow G12 8QQ, UK

*To whom correspondence should be addressed.


  Abstract

Summary: We present a Cytoscape plugin for the inference and visualization of networks from high-resolution mass spectrometry metabolomic data. The software also provides access to basic topological analysis. This open source, multi-platform software has been successfully used to interpret metabolomic experiments and will enable others using filtered, high mass accuracy mass spectrometric data sets to build and analyse networks.

Availability: http://compbio.dcs.gla.ac.uk/fabien/abinitio/abinitio.html

Contact: Fabien.Jourdan{at}toulouse.inra.fr

Supplementary information: http://compbio.dcs.gla.ac.uk/fabien/abinitio/doc/Supplementary.pdf

Associate Editor: Thomas Lengauer

Received on August 9, 2007; revised on August 9, 2007; accepted on October 17, 2007

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