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Bioinformatics Advance Access originally published online on July 4, 2008
Bioinformatics 2008 24(17):1955-1956; doi:10.1093/bioinformatics/btn344
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© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

TRITON: a graphical tool for ligand-binding protein engineering

Martin Prokop 1, Jan Adam 1, Zdenek Kríz 1, Michaela Wimmerová 1,2 and Jaroslav Koca 1,*

1National Centre for Biomolecular Research and 2Department of Biochemistry, Faculty of Science, Masaryk University, Kotlárská 2, 611 37 Brno, Czech Republic

*To whom correspondence should be addressed.


  Abstract

Summary: The new version of the TRITON program provides user-friendly graphical tools for modeling protein mutants using the external program MODELLER and for docking ligands into the mutants using the external program AutoDock. TRITON can now be used to design ligand-binding proteins, to study protein–ligand binding mechanisms or simply to dock any ligand to a protein.

Availability: Executable files of TRITON are available free of charge for academic users at http://ncbr.chemi.muni.cz/triton/

Contact: triton{at}chemi.muni.cz

Supplementary information: Supplementary data are available at Bioinformatics online.

Associate Editor: Dmitrij Frishman

Received on April 2, 2008; revised on July 2, 2008; accepted on July 3, 2008

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