Bioinformatics Advance Access originally published online on July 25, 2008
Bioinformatics 2008 24(18):2122-2123; doi:10.1093/bioinformatics/btn390
The CellML Model Repository
Auckland Bioengineering Institute, The University of Auckland, Auckland 1010, New Zealand
*To whom correspondence should be protect
| Abstract |
|---|
Summary: The CellML Model Repository provides free access to over 330 biological models. The vast majority of these models are derived from published, peer-reviewed papers. Model curation is an important and ongoing process to ensure the CellML model is able to accurately reproduce the published results. As the CellML community grows, and more people add their models to the repository, model annotation will become increasingly important to facilitate data searches and information retrieval.
Availability: The CellML Model Repository is publicly accessible at http://www.cellml.org/models
Contact: c.lloyd{at}auckland.ac.nz
Associate Editor: Jonathan Wren
Received on June 16, 2008; revised on July 15, 2008; accepted on July 23, 2008
This article has been cited by other articles:
![]() |
S. M. Wimalaratne, M. D. B. Halstead, C. M. Lloyd, M. T. Cooling, E. J. Crampin, and P. F. Nielsen A method for visualizing CellML models Bioinformatics, November 15, 2009; 25(22): 3012 - 3019. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. L. Lister, M. Pocock, M. Taschuk, and A. Wipat Saint: a lightweight integration environment for model annotation Bioinformatics, November 15, 2009; 25(22): 3026 - 3027. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. Alterovitz, T. Muso, and M. F. Ramoni The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms Brief Bioinform, November 11, 2009; (2009) bbp054v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. M. Wimalaratne, M. D. B. Halstead, C. M. Lloyd, E. J. Crampin, and P. F. Nielsen Biophysical annotation and representation of CellML models Bioinformatics, September 1, 2009; 25(17): 2263 - 2270. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Endler, N. Rodriguez, N. Juty, V. Chelliah, C. Laibe, C. Li, and N. Le Novere Designing and encoding models for synthetic biology J R Soc Interface, August 6, 2009; 6(Suppl_4): S405 - S417. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Matsuoka, S. Ghosh, and H. Kitano Consistent design schematics for biological systems: standardization of representation in biological engineering J R Soc Interface, August 6, 2009; 6(Suppl_4): S393 - S404. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. P. Nickerson and M. L. Buist A physiome standards-based model publication paradigm Phil Trans R Soc A, May 28, 2009; 367(1895): 1823 - 1844. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. A. Beard, R. Britten, M. T. Cooling, A. Garny, M. D.B. Halstead, P. J. Hunter, J. Lawson, C. M. Lloyd, J. Marsh, A. Miller, et al. CellML metadata standards, associated tools and repositories Phil Trans R Soc A, May 28, 2009; 367(1895): 1845 - 1867. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Linge, J. Sundnes, M. Hanslien, G.T. Lines, and A. Tveito Numerical solution of the bidomain equations Phil Trans R Soc A, May 28, 2009; 367(1895): 1931 - 1950. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. M. Wimalaratne, M. D. B. Halstead, C. M. Lloyd, M. T. Cooling, E. J. Crampin, and P. F. Nielsen Facilitating modularity and reuse: guidelines for structuring CellML 1.1 models by isolating common biophysical concepts Exp Physiol, May 1, 2009; 94(5): 472 - 485. [Abstract] [Full Text] [PDF] |
||||




