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Bioinformatics Advance Access originally published online on November 24, 2007
Bioinformatics 2008 24(2):276-278; doi:10.1093/bioinformatics/btm556
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

RReportGenerator: automatic reports from routine statistical analysis using R

Wolfgang Raffelsberger 1,*,{dagger}, Yannick Krause 1,{dagger}, Luc Moulinier 1, David Kieffer 1, Anne-Laure Morand 2, Laurent Brino 2 and Olivier Poch 1

1Laboratoire de Bioinformatique et Génomique Intégratives, IGBMC, UMR 7104, 67404 Illkirch, France and 2Plate-forme ‘Puces à Cellules Transfectées’, LBGS, CEBGS-IGBMC, 67404 Illkirch, France

*To whom correspondence should be addressed.


  Abstract

Summary: With the establishment of high-throughput (HT) screening methods there is an increasing need for automatic analysis methods. Here we present RReportGenerator, a user-friendly portal for automatic routine analysis using the statistical platform R and Bioconductor. RReportGenerator is designed to analyze data using predefined analysis scenarios via a graphical user interface (GUI). A report in pdf format combining text, figures and tables is automatically generated and results may be exported. To demonstrate suitable analysis tasks we provide direct web access to a collection of analysis scenarios for summarizing data from transfected cell arrays (TCA), segmentation of CGH data, and microarray quality control and normalization.

Availability: RReportGenerator, a user manual and a collection of analysis scenarios are available under a GNU public license on http://www-bio3d-igbmc.u-strasbg.fr/~wraff

Contact: wolfgang.raffelsberger{at}igbmc.u-strasbg.fr

{dagger}The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.

Associate Editor: Chris Stoeckert

Received on June 28, 2007; revised on November 2, 2007; accepted on November 2, 2007

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