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Bioinformatics Advance Access originally published online on December 1, 2007
Bioinformatics 2008 24(3):443-444; doi:10.1093/bioinformatics/btm593
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© The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

OBO Explorer: an editor for open biomedical ontologies in OWL

Stuart Aitken 1,*, Yin Chen 1 and Jonathan Bard 2

1School of Informatics, University of Edinburgh, 11 Crichton Street, Edinburgh EH8 9LE and 2School of Biomedical Sciences, University of Edinburgh, 1 George Square, Edinburgh EH8 9JZ, UK

*To whom correspondence should be addressed.


  Abstract

Motivation: To clarify the semantics, and take advantage of tools and algorithms developed for the Semantic Web, a mapping from the Open Biomedical Ontologies (OBO) format to the Web Ontology Language (OWL) has been established. We present an ontology editor that allows end users to work directly with this OWL representation of OBO format ontologies.

Availability: http://www.aiai.ed.ac.uk/project/cobra-ct

Contact: stuart{at}aiai.ed.ac.uk

Associate Editor: Dmitrij Frishman

Received on August 20, 2007; revised on November 12, 2007; accepted on November 27, 2007

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