Skip Navigation


Bioinformatics Advance Access originally published online on March 18, 2008
Bioinformatics 2008 24(8):1102-1103; doi:10.1093/bioinformatics/btn085
This Article
Right arrow Full Text
Right arrow Full Text (Print PDF)
Right arrow All Versions of this Article:
24/8/1102    most recent
btn085v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Morris, J. A.
Right arrow Articles by Jones, C.
PubMed
Right arrow PubMed Citation
Right arrow Articles by Morris, J. A.
Right arrow Articles by Jones, C.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2008. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

A suite of Perl modules for handling microarray data

James A. Morris *, Simon A. Gayther , Ian J. Jacobs and Christopher Jones

Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, London, United Kingdom

*To whom correspondence should be addressed.


  Abstract

Summary: We describe PerlMAT, a Perl microarray toolkit providing easy to use object-oriented methods for the simplified manipulation, management and analysis of microarray data. The toolkit provides objects for the encapsulation of microarray spots and reporters, several common microarray data file formats and GAL files. In addition, an analysis object provides methods for data processing, and an image object enables the visualisation of microarray data. This important addition to the Perl developer's library will facilitate more widespread use of Perl for microarray application development within the bioinformatics community. The coherent interface and well-documented code enables rapid analysis by even inexperienced Perl developers.

Availability: Software is available at http://sourceforge.net/projects/perlmat

Contact: james.morris{at}ucl.ac.uk

Associate Editor: John Quackenbush

Received on December 14, 2007; revised on February 14, 2008; accepted on March 1, 2008

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?




Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.