Skip Navigation


Bioinformatics Advance Access originally published online on February 25, 2009
Bioinformatics 2009 25(6):836-837; doi:10.1093/bioinformatics/btp069
This Article
Right arrow Full Text
Right arrow Full Text (Print PDF)
Right arrow Supplementary Data
Right arrow All Versions of this Article:
25/6/836    most recent
btp069v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Vanlier, J.
Right arrow Articles by Beard, D. A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Vanlier, J.
Right arrow Articles by Beard, D. A.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

BISEN: Biochemical Simulation Environment

J. Vanlier 1, F. Wu 2, F. Qi 2, K. C. Vinnakota 2, Y. Han 2, R. K. Dash 2, F. Yang 3 and D. A. Beard 2,*

1BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore

*To whom correspondence should be addressed.


  Abstract

Summary: The Biochemical Simulation Environment (BISEN) is a suite of tools for generating equations and associated computer programs for simulating biochemical systems in the MATLAB® computing environment. This is the first package that can generate appropriate systems of differential equations for user-specified multi-compartment systems of enzymes and transporters accounting for detailed biochemical thermodynamics, rapid equilibria of multiple biochemical species and dynamic proton and metal ion buffering.

Availability: The software and a user manual (including several tutorial examples) are available at bbc.mcw.edu/BISEN.

Contact: dbeard{at}mcw.edu

Associate Editor: Alfonso Valencia

Received on November 24, 2008; revised on January 23, 2009; accepted on January 28, 2009

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?




Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.