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Bioinformatics Advance Access published online on January 22, 2004
Bioinformatics, doi:10.1093/bioinformatics/btg444
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received July 23, 2003
Accepted September 10, 2003

Applications note

VisCoSe: visualization and comparison of consensus sequences

Michael Spitzer 1*, Georg Fuellen 1, Paul Cullen 2, Stefan Lorkowski 3

1 Integrated Functional Genomics, IZKF, University Hospital Münster, Von-Esmarch-Str. 56, 48149 Münster, Germany
2 Institute of Arteriosclerosis Research, Domagkstr. 3, 48149 Münster, Germany; Ogham GmbH, Mendelstr. 11, 48149 Münster, Germany
3 Institute of Arteriosclerosis Research, Domagkstr. 3, 48149 Münster, Germany; Institute of Biochemistry, Wilhelm-Klemm-Straße 2, 48149 Münster, Germany

* To whom correspondence should be addressed. E-mail: michael.spitzer{at}uni-muenster.de.


  Abstract

Summary: We introduce VisCoSe as a WWW service and a stand-alone command line Perl script for visualizing and comparing consensus sequences of protein and nucleotide sequences. VisCoSe is the only interface available that simultaneously calculates consensus sequences of multiple datasets and automatically compares these consensus sequences. Furthermore, VisCoSe allows visualization of chemical properties of amino acids.

Availability: http://viscose.ifg.uni-muenster.de/


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