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Bioinformatics Advance Access published online on February 10, 2004
Bioinformatics, doi:10.1093/bioinformatics/bth072
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received August 14, 2003
Revised October 19, 2003
Accepted October 19, 2003

Applications note

CVD: the intestinal crypt/villus in situ hybridization database

Line Olsen 1, Morten Hansen 1, Claus T. Ekstrøm 2, Jesper T. Troelsen 1, Jørgen Olsen 1*

1 Department of Biochemistry & Genetics, Biochemistry Laboratory C, University of Copenhagen, The Panum Institute, Blegdamsvej 3, DK-2200 Copenhagen N, Denmark
2 Department of Biostatistics, Institute of Public Health, University of Copenhagen, The Panum Institute, Blegdamsvej 3, DK-2200 Copenhagen N, Denmark

* To whom correspondence should be addressed. E-mail: jolsen{at}imbg.ku.dk.


  Abstract

Summary: The intestinal crypt/villus in situ hybridization database (CVD) query interface is a web based tool to search for genes with similar relative expression patterns along the crypt/villus axis of the mammalian intestine. The underlying CVD is an online database holding information for relative gene expression patterns in the mammalian intestine and it is based on the scoring of in situ hybridization experiments reported in the literature. CVD contains expression data for 88 different genes collected from 156 different in situ hybridization profiles. The web-based query interface allows execution of both single gene queries and pattern searches. The query results provide links to the most relevant public gene databases.

Availability: http://pc113.imbg.ku.dk/ps/


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