Skip Navigation



Bioinformatics Advance Access published online on February 10, 2004
Bioinformatics, doi:10.1093/bioinformatics/bth080
Bioinformatics © Oxford University Press 2004; all rights reserved
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrow All Versions of this Article:
20/9/1455    most recent
bth080v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Batada, N. N.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Batada, N. N.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Received December 11, 2002
Revised November 17, 2003
Accepted December 18, 2003

Applications note

CNplot: visualizing pre-clustered networks

Nizar N. Batada 1*

1 Program in Biophysics, Stanford University, Stanford, CA, USA, 94305

* To whom correspondence should be addressed. E-mail: nbatada{at}stanford.edu.


  Abstract

Summary: CNplot is a simple technique for visualization of global connectivity within a pre-clustered network data. CNplot is easy to implement and in most cases produces a informative and satisfactory summary of the data.

Availability: A Java implementation is available with which allows user to modify graphics parameters and produces a LATEX output. This software is free and is available at http://csb.stanford.edu/nbatada/VCN.html


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 J R Soc InterfaceHome page
J. P. Goncalves, M. Graos, and A. X.C.N. Valente
POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data
J R Soc Interface, October 6, 2009; 6(39): 881 - 896.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
D. Wilson, M. Madera, C. Vogel, C. Chothia, and J. Gough
The SUPERFAMILY database in 2007: families and functions
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D308 - D313.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
J. Vlasblom, S. Wu, S. Pu, M. Superina, G. Liu, C. Orsi, and S. J. Wodak
GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks.
Bioinformatics, September 1, 2006; 22(17): 2178 - 2179.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
S. D. Hooper and P. Bork
Medusa: a simple tool for interaction graph analysis
Bioinformatics, December 15, 2005; 21(24): 4432 - 4433.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.